Topic on Talk:Alpha Protocol
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Some versions of the game have translated some strings which should have been left alone and due to that the configuration files save certain settings broken as instead of them being set to true or false they use their translated counterparts. To fix that you need to go to Engine\Localization\*your language version*\core.*** and in the [general] section replace these strings:
True=True False=False None=None Yes=Yes No=No